gwas-summary-statistics

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

GWAS summary statistics files QC tool

TWAS-pipeline

BWMR (Bayesian Weighted Mendelian Randomization)

Software to infer latent pleiotropic components from GWAS summary data

Older repo for MRLocus. See new website for software usage guide:

Code and simulations using interaction-LD score regression

Tool for integrative gene-based association analysis using GWAS summary stats

Format of GWAS summary statistics.

High Performance GWAS Plotting and Annotation

Make interactive LocusZoom plots from a local GWAS file

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

MultiVariate Polygenic Mixture Model

scEPS integrates GWAS and single-cell disease cell atlas data to identify disease-associated cell neighborhoods.

Script for designing a manhattan plot.

Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.

Code for annotating GWAS with rsIDs and performing genome build liftover

Polygenic risk modeling with latent trait-related genetic components

Mendelian Randomization approach using Cross Ancestral Model