blastn

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Seamless Integration of BLAST Sequence Searches in R

An automated pipeline for retrieving orthologous DNA sequences from GenBank in R

Pipeline to create phage genome synteny graphics from genbank files

genomic alignment similarity search tool

Microsoft Azure HPC & Big Compute

Obsolete!! Begin to turn to PrimerServer2

A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs

Mining NCBI BLAST output

A beginner’s guide to Bioinformatics

data used in the youtube video

PhylUp - a python package to automatically generate alignments (or update alignments and phylogenies) using local sequences or a local Genbank database while controlling for the number of sequences per OTU.

A program used to find indels on target gene edited by CRISPR/Cas9

The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs

BLAST without Sys.Call()

This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.

Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.

omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…

Parser of BLAST results