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Adapt to SuiteSparse:GraphBLAS 10.5.0 and read its version from the library - #628

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Sep 11, 2026
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@eriknw eriknw commented Aug 26, 2026

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New bottom of the stack; #587 and the chain above it now build on this.

SuiteSparse:GraphBLAS 10.5.0 stopped checking, after a build, whether every value happened to be the same: "GrB_Matrix_build and GrB_Vector_build: no longer do a post-iso check; they leave the matrix in non-iso format even if all the entries are the same." Four tests read that check as if it were python-graphblas's own contract and went red. Each one wanted an iso object rather than an inference, so each now asks for one with ss.build_scalar, which means the same thing on every SuiteSparse version and produces the same storage formats the tests were selecting for. from_coo is left alone: adding a scan of the values to recover the old behavior would re-add the cost upstream just removed.

The version gates had a second, quieter problem. graphblas.core.ss derived the C library version by parsing suitesparse_graphblas.__version__, which is the version of the Python wrapper. The two normally agree, but a development build between releases reports the previous one: psg 10.4.1.0 against a 10.5.0 library here, so every gate saw 10.4.1 and any 10.5 branch would have been silently skipped. Read the library's own GxB_IMPLEMENTATION_* constants instead, falling back to the old parse where a build does not expose them.

test_openmp_enabled keeps its hard assertion and gains a message saying what is wrong and that the fault is in the installed build. It caught a real one: conda-forge's first graphblas 10.5.0 build on osx-arm64 shipped without OpenMP. The build 1 rebuild (2026-08-26) restored OpenMP and the assertion passes again.

…ibrary

10.5.0 stopped checking, after a build, whether every value happened to be
the same: "GrB_Matrix_build and GrB_Vector_build: no longer do a post-iso
check; they leave the matrix in non-iso format even if all the entries are
the same." Four tests read that check as if it were python-graphblas's own
contract and went red. Each one wanted an iso object rather than an
inference, so each now asks for one with ``ss.build_scalar``, which means
the same thing on every SuiteSparse version and produces the same storage
formats the tests were selecting for. ``from_coo`` is left alone: adding a
scan of the values to recover the old behavior would re-add the cost
upstream just removed.

The version gates had a second, quieter problem. ``graphblas.core.ss``
derived the C library version by parsing ``suitesparse_graphblas.__version__``,
which is the version of the Python wrapper. The two normally agree, but a
development build between releases reports the previous one: psg
10.4.1.0 against a 10.5.0 library here, so every gate saw 10.4.1 and any
10.5 branch would have been silently skipped. Read the library's own
GxB_IMPLEMENTATION_* constants instead, falling back to the old parse where
a build does not expose them.

test_openmp_enabled keeps its hard assertion and gains a message saying what
is wrong and that the fault is in the installed build. It caught a real one:
conda-forge's first graphblas 10.5.0 build on osx-arm64 shipped without
OpenMP. The build 1 rebuild (2026-08-26) restored OpenMP and the assertion
passes again.
@eriknw

eriknw commented Aug 27, 2026

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The macos-15-intel segfault here is real, and it is fixed three rungs up

build_and_test (macos-15-intel, pytest_normal) segfaults in
test_op.py::test_udt_auto_monoid, at arr_any = a.reduce(monoid.any).new()
where a is a Vector of the array UDT FP64[4]. It is not a flake and not a
SuiteSparse bug.

Cause. The array-UDT cfunc wrapper on main stores numba's NestedArray
descriptor (data pointer, shape, strides) through the raw element pointer
instead of the element payload:

np.dtype((float64, (4,))).itemsize          = 32
numba nestedarray(float64, (4,)) ABI value  = 56

so every call overruns the output element by 24 bytes. SuiteSparse:GraphBLAS
10.5.0 moved the reduce accumulator to a stack VLA
(Source/reduce/GB_reduce_to_scalar.c:103, GB_void z [GB_VLA(zsize)]), so
those 24 bytes now smash the C stack frame and GB_Scalar_reduce jumps through
a corrupted pointer. On 10.3.1 the same overrun landed somewhere harmless, which
is why main looks green: main's last macos-15-intel job drew libgraphblas
10.3.1, and 10.4/10.5 only enter the CI pool with #629.

Why only this branch. 13 macos-15-intel jobs in the 2026-08-26 batch
installed libgraphblas 10.5.0 and actually ran the test. 12 passed and 1
segfaulted. Every one that passed is on a branch containing d7a190b; this
branch is the only one that is not. Dependency versions do not separate the two
groups: 41-ci-dep-pools-refresh passed on the identical numba 0.67.0 + numpy
2.5.2 + SS 10.5.0 triple.

The fix already exists: d7a190b, "Pass and receive numpy views in array-UDT
UDFs" (#589), which binds operands and output with numba.carray(ptr, shape)
and slice-assigns. Bisected over the chain, 6 runs per commit in an osx-64
environment matching the failing job (python 3.14.7, psg 10.5.0.0, libgraphblas
10.5.0, numba 0.67.0, numpy 2.5.2):

main      2e03b549   crash 5/6
#628      8c96f190   crash 6/6
#587      4f0dabb4   crash 6/6
#588      53eb255c   crash 5/6
#589      d7a190bc   pass  6/6   <- the fix
tip       712caaf6   pass  6/6

Controls: the same code on macOS arm64 passes 6/6, and on x86_64 against SS
10.3.1 passes 6/6, so the crash needs x86_64 plus 10.5.0's frame layout. The
overrun itself is present on every platform.

Blast radius on main, also verified: Matrix.reduce_scalar(monoid.any) on
the same array UDT crashes too, and so does a user monoid built from a plain
second UDF, so this is the array-UDT wrapper rather than anything specific to
monoid.any. The ewise path does not crash; it overruns a heap buffer instead,
silently. Record UDTs are unaffected.

Consequences for the chain. #628, #629, #587 and #588 sit below d7a190b, so
this job cannot be made green in place and re-running it will not help. Nothing
should be skipped or xfailed here: a guard would paper over a genuine
memory-safety fix. #629 puts 10.4/10.5 into the psg pool, so once it lands
main will draw 10.5 on macos-15-intel (roughly 1 job in 3 by the counts
above) until #589 lands. Merging #628 through #589 in one pass keeps that window
short.

Nothing to report upstream: SS 10.5 is correct, it just turned a pre-existing
silent corruption into a crash.

@eriknw

eriknw commented Sep 11, 2026

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huh, Opus 5 posted comments as me. That's against my rules for it 😞 . Kinda helpful though.

Anyway, I think the code changes here are reasonable, but the comments are WAAAY too verbose. I'll do a pass to improve docs and comments later. As the previous comment indicates, it'll be nice to get a few PRs in so we can get CI to (hopefully) pass

@eriknw
eriknw merged commit 9682283 into main Sep 11, 2026
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@eriknw
eriknw deleted the ssgb-105-adapt branch September 11, 2026 16:46
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