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madisonmedeiros/README.md

*✿❀ ❀✿* Hi, I'm Maddie *✿❀ ❀✿*

I'm a computational biologist with an M.S. in Bioinformatics from UMass Lowell. I specialize in cancer genomics and rare variant analysis. My graduate research focused on gene-based burden testing in neuroblastoma. I identified candidate cancer genes using large-scale genomic data, HPC pipelines, and population databases like gnomAD and COSMIC.

I'm currently building toward a career in cancer bioinformatics. Currently, I am working on deepening my skills in RNA-seq analysis, somatic variant calling, and pipeline development with Python, R, and Linux.


*ೃ༄ What I have worked with .ೃ࿐

  • Rare variant burden testing (RV-Excalibur, ANNOVAR, gnomAD)
  • VCF processing and variant annotation
  • Python (pandas, scripting, pipeline automation)
  • HPC / SLURM job scheduling
  • Cancer genomics databases (COSMIC, ClinVar, gnomAD)

*ೃ༄ Outside the lab .ೃ࿐

During undergrad, I was part of the varsity softball team at Merrimack College, where I learned valuable skills like time management and leadership.

When I'm not coding, I'm playing video games or spending time with my wife, our dog, Nova, and our cat, Simmy! ฅ^•ﻌ•^ฅ


📫 Reach me at: [[email protected]]
🔗 neuroblastoma-rare-variant-analysis

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  1. neuroblastoma-rare-variant-analysis neuroblastoma-rare-variant-analysis Public

    Gene burden testing pipeline for rare variant discovery in neuroblastoma using RV-Excalibur and gnomAD.

    Python