Issues

• # Question about using one trait-specific MTAG output as the primary downstream GWAS

  JonJala/mtag#257 · Filter by author chaowanglab opened on Sep 24, 2026
  1

• Question About Constructing a Single Integrated Trait Using MTAG

  JonJala/mtag#256 · Filter by author Jinqi1201 opened on Jul 1, 2026
  2

• Inquiry about MTAG output units for binary and continuous traits

  JonJala/mtag#255 · Filter by author LouChen-med opened on Jun 2, 2026
  5

• error with median value of signed_sumstat

  JonJala/mtag#254 · Filter by author dor25 opened on May 7, 2026

• MTAG fails to produce summary for LDL × AD pair; is low LDSC rg a potential cause?

  JonJala/mtag#253 · Filter by author zhuochang863-ai opened on Mar 29, 2026
  2

• Sample size and MTAG

  JonJala/mtag#251 · Filter by author yuexuanxu22 opened on Feb 16, 2026

• Questions regarding the scale of MTAG input and output statistics

  JonJala/mtag#250 · Filter by author LouChen-med opened on Feb 7, 2026
  3

• segfault

  JonJala/mtag#249 · Filter by author yhuang11-ilmn opened on Jan 29, 2026
  1

• Error code in convering summary statistics

  JonJala/mtag#248 · Filter by author dor25 opened on Jan 2, 2026
  1

• is a1 reference or effect?

  JonJala/mtag#247 · Filter by author mgarrett1020 opened on Dec 10, 2025
  1

• Can MTAG-enhanced GWAS for Trait A (jointly analyzed with Trait B) be used in genetic correlation and MR with Disease 2?

  JonJala/mtag#246 · Filter by author zllfly-hub opened on Dec 1, 2025
  2

• Flipped alleles and phantom power

  JonJala/mtag#245 · Filter by author soren-rand opened on Nov 24, 2025
  3

• Effect Directionality and Similarity of Results Across Traits

  JonJala/mtag#243 · Filter by author yuexuanxu22 opened on Sep 30, 2025
  1

• Segmentation fault (core dumped)

  JonJala/mtag#242 · Filter by author xiumukediao-creat opened on Sep 6, 2025
  1

• Running MTAG without SNPIDs (SNP column having chr:pos).

  JonJala/mtag#241 · Filter by author giuliaatosetto-netizen opened on Aug 4, 2025
  5

• LinAlgError: Matrix is not positive definite

  JonJala/mtag#240 · Filter by author yuechengguang opened on Jul 31, 2025
  1

• Should the sample size be adjusted when performing subsequent analysis using MTAG results?

  JonJala/mtag#239 · Filter by author 2711459496 opened on Jul 29, 2025
  1

• Differences between PRS-derived single-trait MTAG GWAS and GWAMA summary statistics for SBP & DBP

  JonJala/mtag#238 · Filter by author brendaudosen opened on Jul 22, 2025
  2

• MTAG for other species

  JonJala/mtag#237 · Filter by author heebokp opened on Jun 24, 2025
  4

• Can MTAG output be re-used as input for further MTAG runs?

  JonJala/mtag#235 · Filter by author fengliu001 opened on May 17, 2025
  4

• Can the X chromosome be included in the LD reference panel

  JonJala/mtag#234 · Filter by author Delaney-AM opened on May 14, 2025
  5

• Scope of Application for MTAG Meta-Analysis (--perfect_gencov + --equal_h2)

  JonJala/mtag#232 · Filter by author 2711459496 opened on Apr 7, 2025
  2

• Applying MTAG to a combination of continuous and categorical traits

  JonJala/mtag#231 · Filter by author YingkaiSun opened on Apr 7, 2025
  1

• Query: Multiple Correlations printed - which is the true genetic correlation between traits?

  JonJala/mtag#230 · Filter by author Delaney-AM opened on Apr 3, 2025
  4

• Questions regarding high maxFDR in my results

  JonJala/mtag#229 · Filter by author jacksondu76 opened on Mar 5, 2025
  9