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SkeletalVis-Transcriptomics
SkeletalVis-Transcriptomics PublicNextflow pipeline for microarray and RNA-seq
R 2
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InflammatorySkinGeoMX
InflammatorySkinGeoMX PublicSpatial transcriptomics analysis of inflammatory skin diseases
R 2
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example_Rocker_repo
example_Rocker_repo Publichow to set up a repo with authentication using keys
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EffectorScan-prototype
EffectorScan-prototype PublicIdentification of novel effectors among unique fungal genes (fusarium oxysporum).
R 1
Repositories
- GSM-severity-multiomics Public
R based pipeline that runs 1) microbiome feature exploration from trimmed 16S reads through to diversity analyses and associations with clinical metadata 2) normalising and assessing NMR metabolomics and any relationships with clinical metadata 3) integrates both omics arms into networks to identify key graph components.
- llms-for-bioinformaticians Public
Slides and demos for the NorthernBUG 17 workshop: LLMs for bioinformaticians
- CollagenBiomechanics Public
Code used to process and analyse biomechanical data from the paper 'Type I collagen homotrimer alters the intrinsic and viscoelastic tensile properties of tendon'.
- CNOSerumProteinsPublic Public
- BIOMEDASA-Inspire Public
Materials for KS3 and KS4 students for the work package 'Inspire'. Co-authored by Emily Johnson, Kirsty McCready, Nikita Maurya and Christina McDonald.
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- Leptospira-LIC13259-C8G Public
Code to reproduce work in paper titled 'AlphaFold reveals how pathogenic Leptospira use thiol-disulphide exchange to evade the complement membrane attack complex'
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